XF 1.3 Permissions Help

Hello guys, I am currently having a horrible time trying to use the Xenforo permissions.

I have gave the Administator rank ALL perms, and even gave the user ALL perms. But I am still unable to edit, delete, lock or create threads in certain area's.

I am quite a noob when it comes to permissions, and getting quite frustrated. If one of you could kindly help me out, I would be much appreciated.