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Not just yet re: excluding certain urls (working on it). You can, however, have Rocket Loader excluded from hitting certain scripts on your site.

 

Rocket Loader in Automatic Mode

 

It is basically the reverse in Manual Mode (change to cfasync="true").

 

You can always test to see if Rocket Loader is the culprit by turning it off as a test. You should also report any Rocket Loader bugs so we can check it out.